PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G036600.1.p
Common NameGLYMA_10G036600, LOC100779173
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 159aa    MW: 17855.5 Da    PI: 6.2374
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G036600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-191667256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +y+G+r+++ +g+++AeIrdp+     +r++lg+f+tae+Aa+a++aa+  ++g+
  Glyma.10G036600.1.p 16 RYRGIRRRP-WGKFAAEIRDPTRK--GTRIWLGTFDTAEQAARAYDAAAFHFRGH 67
                         69*******.**********8542..4***********************99996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.72E-211675No hitNo description
PfamPF008471.1E-131667IPR001471AP2/ERF domain
PROSITE profilePS5103225.5011674IPR001471AP2/ERF domain
SMARTSM003803.8E-361680IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-231675IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-321676IPR001471AP2/ERF domain
PRINTSPR003679.4E-121728IPR001471AP2/ERF domain
PRINTSPR003679.4E-124056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEGGRSSVSN GNVEVRYRGI RRRPWGKFAA EIRDPTRKGT RIWLGTFDTA EQAARAYDAA  60
AFHFRGHRAI LNFPNEYQSH NPNSSLPMPL AVSAPPSYSS SSSTSNYSGD DNNNHLVRPA  120
FSGEIMQGGD HDDDTFELEY FDNKLLEELL QMQDNRHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-261774663ATERF1
3gcc_A2e-261774663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.217880.0cotyledon| hypocotyl| meristem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0962090.0BT096209.1 Soybean clone JCVI-FLGm-20D23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241134.11e-116uncharacterized protein LOC100779173
SwissprotQ9LTC54e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLC6TF301e-116C6TF30_SOYBN; Uncharacterized protein
STRINGGLYMA10G04190.11e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-28ERF family protein